#--*- makefile -*--------------------------------------------------------------
#
#   Standard makefile
#
#------------------------------------------------------------------------------

# Path to project directory.
UPDIR = ..
# Path to subdirectories.
SUBDIR=

#
# Libraries and paths (which are not defined globally).
#

LIBS = -lsequence -ltools2

ifdef (concurrent) 
LIBS += -ltbb
endif

LIB_PATH =
# -L.

# INC_PATH = -I. -I../../lib/tbb/include

#
# Objects and headers
#

SOURCES = bed2wiggle.cc regionscores.cc overlap.cc sequencealignmenttest.cc SequenceAlignmentTools.cc SequenceAlignmentIOTools.cc SequenceMutator.cc SimpleSequenceAlignment.cc 

OBJECTS = SequenceAlignmentTools.o SequenceAlignmentIOTools.o SequenceMutator.o SimpleSequenceAlignment.o

TARGETS = bed2wiggle regionscores overlap sequencealignmenttest

LIBRARY = libsequence.a

#
# Install rule
#

compile: all

install: $(LIBRARY) $(TARGET)
	mv $(LIBRARY) $(UPDIR)/lib

#
# Call global Makefile to do the job.
#

include ../tools2/Makefile.global












