RNAJunction Database - Junction Profile:9488
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 9488: 1YL4_j4_A-G115_A-U239_A-G286_A-C311

Primary Citation: (from PDB entry 1YL4)

L.JENNER P.ROMBY B.REES C.SCHULZE-BRIESE M.SPRINGER C.EHRESMANN B.EHRESMANN D.MORAS G.YUSUPOVA M.YUSUPOV TRANSLATIONAL OPERATOR OF MRNA ON THE RIBOSOME: HOW REPRESSOR PROTEINS EXCLUDE RIBOSOME BINDING SCIENCE V. 308 120 2005

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:4-wayCluster:2J02 j4 A-G115 A-U239 A-G286 A-C311 
NC-IUBMB Classification:Cluster Page
Angles: 62:63:111:113:125:171°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.97996Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CGUCCC 6nt

Strand 2: Chain A: GUGAGUAACGCG 12nt

Strand 3: Chain A: GGGUAGCC 8nt

Strand 4: Chain A: GGCCAC 6nt

Valid XHTML 1.0 Transitional