#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 2
LILLEY = HS1HS2
FINGERPRINT = 172
LOOP_LENGTH_SUM = 3
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  5
S1_NAME_ID3 = 11
S1_NUM_ID5_ORIG =  5
S1_NUM_ID3_ORIG = 11
S1_NAME2_ID5 =  7
S1_NAME2_ID3 = 9
S1_NUM2_ID5_ORIG =  7
S1_NUM2_ID3_ORIG = 9
S1_SQ2 = CGC
S1_SQLEN2 = 3
S1_SQ = GUCGCUC
S1_SQLEN = 7
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  37
S2_NAME_ID3 = 44
S2_NUM_ID5_ORIG =  37
S2_NUM_ID3_ORIG = 44
S2_NAME2_ID5 =  39
S2_NAME2_ID3 = 42
S2_NUM2_ID5_ORIG =  39
S2_NUM2_ID3_ORIG = 42
S2_SQ2 = AAAG
S2_SQLEN2 = 4
S2_SQ = GAAAAGUC
S2_SQLEN = 8
S2_CHAR = B
## Properties of helix 1
H1_INID = 1
H1_OUTID = 8
H1_INID2 = 3
H1_OUTID2 = 6
H1_INID2_ORIG = 7
H1_OUTID2_ORIG = 42
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = B
# Position:
H1_P_X = 11.211482794393627
H1_P_Y = -6.669842218283342
H1_P_Z = 42.497354291881614
# Orientation:
H1_DX_X = -0.41335143463933477
H1_DX_Y = 0.9103951184726347
H1_DX_Z = -0.01792539379765401
H1_DY_X = 0.9060502360834128
H1_DY_Y = 0.40925995796623393
H1_DY_Z = -0.10760695376540497
H1_DZ_X = -0.0906286995095762
H1_DZ_Y = -0.0607207959983489
H1_DZ_Z = -0.9940319027870927
## Properties of helix 2
H2_INID = 1
H2_OUTID = 7
H2_INID2 = 3
H2_OUTID2 = 5
H2_INID2_ORIG = 39
H2_OUTID2_ORIG = 9
H2_INSEQ_CHAR = B
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 14.548613414875009
H2_P_Y = -8.053574585444892
H2_P_Z = 62.47016164992768
# Orientation:
H2_DX_X = -0.789445002959047
H2_DX_Y = -0.6135361305021547
H2_DX_Z = -0.018708390402039754
H2_DY_X = 0.6135285754390267
H2_DY_Y = -0.7877607768160608
H2_DY_Z = -0.05491489442687936
H2_DZ_X = 0.018954535677513817
H2_DZ_Y = -0.054830421105442895
H2_DZ_Z = 0.9983157569119356
#############  END of Description of junction: j1