RNAJunction Database - Junction Profile:11768
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 11768: 2IL9_j2_M-U6109_M-C6127

Primary Citation: (from PDB entry 2IL9)

J.S.PFINGSTEN D.A.COSTANTINO J.S.KIEFT STRUCTURAL BASIS FOR RIBOSOME RECRUITMENT AND MANIPULATION BY A VIRAL IRES RNA SCIENCE V. 314 1450 2006

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:2IL9 j2 M-U6109 M-C6127 
NC-IUBMB Classification:HS3HS5Cluster Page
Angles: 120°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.36698Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain M: GAUGGACCGGA 11nt

Strand 2: Chain M: UCCAAUAUC 9nt

Valid XHTML 1.0 Transitional